RADseq_Ceratonia_siliqua - SRA

SRX13593456: RADseq_Ceratonia_siliqua
1 ILLUMINA (NextSeq 500) run: 2.8M spots, 193.3M bases, 77.7Mb downloads

Design: ddRADseq, EcoRI and MseI, fragment selection between 500 and 600 pb, single end sequencing 1x75bp

Submitted by: Aix Marseille University

Study: Ceratonia siliqua RADseq phylogeography

PRJNA793764 • SRP353386 • All experiments • All runs

RADseq genotypes of the carob tree sampled in the Mediterranean to obtain genomic based phylogeography. A preprint of the results is available here : Baumel A, et al. Genome-wide footprints in the carob tree (Ceratonia siliqua) unveil a new domestication pattern of fruit trees in the Mediterranean. Authorea. 2021. DOI: 10.22541/au.163344873.38613513/v1Filtered files and scripts of analyses are available here : https://osf.io/btrwn/More on the general project: https://dynamic.cirad.fr/

Sample:

SAMN24583167 • SRS11483278 • All experiments • All runs

Organism: Ceratonia siliqua

Library:

Name: MAPAR01-06_R1

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: Reduced Representation

Layout: SINGLE

Runs: 1 run, 2.8M spots, 193.3M bases, 77.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR17421786	2,816,341	193.3M	77.7Mb	2022-01-04

ID:: 18884299

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